Abstract:
We calculate the band structure of the spectra of Hamiltonians of regular DNA duplexes and show that in single-stranded periodic polynucleotides whose period is determined by the number m of nucleotides in an elementary cell, the spectrum consists of m nonintersecting energy bands. In DNA duplexes, the number of energy bands is equal to 2m, and the bands can intersect. Discrete energy levels can be present in forbidden bands in the case of (semi)bounded chains or duplexes.
Keywords:
block three-diagonal matrix, DNA, Schrödinger equation, Tamm level.
Citation:
V. D. Lakhno, V. B. Sultanov, “Band structure of the spectra of Hamiltonians of regular polynucleotide duplexes”, TMF, 176:3 (2013), 429–443; Theoret. and Math. Phys., 176:3 (2013), 1194–1206
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\paper Band structure of the~spectra of Hamiltonians of regular polynucleotide duplexes
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\jour Theoret. and Math. Phys.
\yr 2013
\vol 176
\issue 3
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Linking options:
https://www.mathnet.ru/eng/tmf8514
https://doi.org/10.4213/tmf8514
https://www.mathnet.ru/eng/tmf/v176/i3/p429
This publication is cited in the following 3 articles:
Macia E., “Base-Pairs' Correlated Oscillation Effects on the Charge Transfer in Double-Helix B-Dna Molecules”, Materials, 13:22 (2020), 5119
N. S. Fialko, E. V. Sobolev, V. D. Lakhno, “On the calculation of thermodynamic quantities in the Holstein model for homogeneous polynucleotides”, J. Exp. Theor. Phys., 124:4 (2017), 635–642
N. S. Fialko, E. V. Sobolev, V. D. Lakhno, “Temperature dependence of electronic heat capacity in Holstein model of DNA”, Phys. Lett. A, 380:17 (2016), 1547–1550