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Matematicheskaya Biologiya i Bioinformatika, 2010, Volume 5, Issue 2, Pages 202–214 (Mi mbb55)  

This article is cited in 1 scientific paper (total in 1 paper)

Mathematical Modeling

Method of pseudoaveraged functions in the RISM theory. Temperature dependence of oxytocin peptide hydration

D. A. Tikhonov, E. V. Sobolev

Institute of Mathematical Problems of Biology, Russian Academy of Sciences
Full-text PDF (387 kB) Citations (1)
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Abstract: In the temperature range from 280 K to 340 K oxytocin peptide is simulated by molecular dynamics in various surroundings including explicit water solvent. Using geometry configurations of the peptide we found Gibbs free energy by solving RISM equations for pseudoaveraged correlation functions. Various functionals of Gibbs free energy or excess chemical potential were compared. In the partial wave theory as well as in the approximation of Gaussian fluctuations Gibbs free energy is independent of temperature. Calculations by Singler–Chandler formula or its modifications taking account of repulsive bridge corrections show linear dependence of Gibbs energy on temperature. Analysis suggests that the temperature dependence is associated with the term proportional to the square of the total correlation function.
Key words: RISM, pseudoaveraged correlation functions, thermodynamics, temperature dependence, integral equations of the theory of liquids.
Received 01.12.2010, Published 17.12.2010
Document Type: Article
UDC: 577.3, 544.35
Language: Russian
Citation: D. A. Tikhonov, E. V. Sobolev, “Method of pseudoaveraged functions in the RISM theory. Temperature dependence of oxytocin peptide hydration”, Mat. Biolog. Bioinform., 5:2 (2010), 202–214
Citation in format AMSBIB
\Bibitem{TikSob10}
\by D.~A.~Tikhonov, E.~V.~Sobolev
\paper Method of pseudoaveraged functions in the RISM theory. Temperature dependence of oxytocin peptide hydration
\jour Mat. Biolog. Bioinform.
\yr 2010
\vol 5
\issue 2
\pages 202--214
\mathnet{http://mi.mathnet.ru/mbb55}
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  • https://www.mathnet.ru/eng/mbb/v5/i2/p202
  • This publication is cited in the following 1 articles:
    Citing articles in Google Scholar: Russian citations, English citations
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    Abstract page:297
    Full-text PDF :91
    References:63
    First page:1
     
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