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Matematicheskaya Biologiya i Bioinformatika, 2015, Volume 10, Issue 1, Pages 54–59
DOI: https://doi.org/10.17537/2015.10.54 (Mi mbb211) 		 
Bioinformatics

Stem multiplets: a new approach to the description of tertiary RNA motifs

E. F. Baulinabc, M. A. Roytbergcda

a Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow region, 142290, Russia
b Educational Center of Mathematical Biology, Pushchino State Institute of Natural Sciences, Pushchino, Moscow region, 142290, Russia
c Faculty of Computer Science, National Research University “Higher School of Economics”, Moscow, 101000, Russia
d Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow region, 141700, Russia
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DOI: https://doi.org/10.17537/2015.10.54
Abstract: We present an approach allowing one to describe complex fragments of RNA tertiary structure. The approach is based on the definition of a stem multiplet, i.e. a structural element formed by two or more interacting stems. Using previously developed database of RNA structures (http://server3.lpm.org.ru/urs/) we have revealed all stem multiplets presented in the PDB database.
Key words: 3D RNA structure, multiplet, stem, pseudoknot, link, graph.
Funding agency Grant number
Russian Foundation for Basic Research 12-04-00944_à
14-01-93106_ÍÖÍÈË_à
Received 28.11.2014, Published 06.02.2015
Document Type: Article
UDC: 577.214.5
Language: Russian
Citation: E. F. Baulin, M. A. Roytberg, “Stem multiplets: a new approach to the description of tertiary RNA motifs”, Mat. Biolog. Bioinform., 10:1 (2015), 54–59
Citation in format AMSBIB
\Bibitem{BauRoi15}
\by E.~F.~Baulin, M.~A.~Roytberg
\paper Stem multiplets: a new approach to the description of tertiary RNA motifs
\jour Mat. Biolog. Bioinform.
\yr 2015
\vol 10
\issue 1
\pages 54--59
\mathnet{http://mi.mathnet.ru/mbb211}
\crossref{https://doi.org/10.17537/2015.10.54}
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