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Zhurnal Vychislitel'noi Matematiki i Matematicheskoi Fiziki, 2021, Volume 61, Number 5, Page 895
DOI: https://doi.org/10.31857/S0044466921050112
(Mi zvmmf11246)
 

This article is cited in 3 scientific papers (total in 3 papers)

Mathematical physics

Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems

V. Kh. Khoromskaiaa, B. N. Khoromskyab

a D-04103 Leipzig, Inselstr. 22–26, Max Planck Institute for Mathematics in the Sciences, Germany
b Magdeburg, Max Planck Institute for Dynamics of Complex Technical Systems, Germany
Citations (3)
Abstract: Recently the rank-structured tensor approach suggested a progress in the numerical treatment of the long-range electrostatics in many-particle systems and the respective interaction energy and forces. In this paper, we outline the prospects for tensor-based numerical modeling of the collective electrostatic potential on lattices and in many-particle systems of general type. Our approach, initially introduced for the rank-structured grid-based calculation of the interaction potentials on 3D lattices is generalized here to the case of many-particle systems with variable charges placed on $L^{\otimes d}$ lattices and discretized on fine $n^{\otimes d}$ Cartesian grids for arbitrary dimension $d$. As a result, the interaction potential is represented in a parametric low-rank canonical format in $O(dLn)$ complexity. The total interaction energy can be then calculated in $O(dL)$ operations. Electrostatics in large bio-molecular systems is discretized on a fine $n^{\otimes 3}$ grid by using the novel range-separated $(\mathrm{RS})$ tensor format, which maintains the long-range part of the 3D collective potential of a many-body system in a parametric low-rank form in $O(n)$-complexity. We show how the energy and force field can be easily recovered by using the already precomputed electric field in the low-rank $\mathrm{RS}$ format. The $\mathrm{RS}$ tensor representation of the discretized Dirac delta enables the construction of the efficient energy preserving (conservative) regularization scheme for solving the 3D elliptic partial differential equations with strongly singular right-hand side arising in scientific computing. We conclude that the rank-structured tensor-based approximation techniques provide the promising numerical tools for applications to many-body dynamics in bio-sciences, protein docking and classification problems, for low-parametric interpolation of scattered data in data science, as well as in machine learning in many dimensions.
Key words: Coulomb potential, Slater potential, long-range many-particle interactions, low-rank tensor decomposition, range-separated tensor formats, summation of electrostatic potentials, energy and force calculations.
Received: 24.12.2020
Revised: 24.12.2020
Accepted: 14.01.2021
English version:
Computational Mathematics and Mathematical Physics, 2021, Volume 61, Issue 5, Pages 864–886
DOI: https://doi.org/10.1134/S0965542521050110
Bibliographic databases:
Document Type: Article
UDC: 519.63
Language: Russian
Citation: V. Kh. Khoromskaia, B. N. Khoromsky, “Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems”, Zh. Vychisl. Mat. Mat. Fiz., 61:5 (2021), 895; Comput. Math. Math. Phys., 61:5 (2021), 864–886
Citation in format AMSBIB
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\by V.~Kh.~Khoromskaia, B.~N.~Khoromsky
\paper Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems
\jour Zh. Vychisl. Mat. Mat. Fiz.
\yr 2021
\vol 61
\issue 5
\pages 895
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\crossref{https://doi.org/10.31857/S0044466921050112}
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\transl
\jour Comput. Math. Math. Phys.
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\vol 61
\issue 5
\pages 864--886
\crossref{https://doi.org/10.1134/S0965542521050110}
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  • This publication is cited in the following 3 articles:
    Citing articles in Google Scholar: Russian citations, English citations
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