Zhurnal Vychislitel'noi Matematiki i Matematicheskoi Fiziki
RUS  ENG    JOURNALS   PEOPLE   ORGANISATIONS   CONFERENCES   SEMINARS   VIDEO LIBRARY   PACKAGE AMSBIB  
General information
Latest issue
Archive
Impact factor

Search papers
Search references

RSS
Latest issue
Current issues
Archive issues
What is RSS



Zh. Vychisl. Mat. Mat. Fiz.:
Year:
Volume:
Issue:
Page:
Find






Personal entry:
Login:
Password:
Save password
Enter
Forgotten password?
Register


Zhurnal Vychislitel'noi Matematiki i Matematicheskoi Fiziki, 2021, Volume 61, Number 5, Page 895
DOI: https://doi.org/10.31857/S0044466921050112
(Mi zvmmf11246)
 

This article is cited in 3 scientific papers (total in 3 papers)

Mathematical physics

Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems

V. Kh. Khoromskaiaa, B. N. Khoromskyab

a D-04103 Leipzig, Inselstr. 22–26, Max Planck Institute for Mathematics in the Sciences, Germany
b Magdeburg, Max Planck Institute for Dynamics of Complex Technical Systems, Germany
Citations (3)
Abstract: Recently the rank-structured tensor approach suggested a progress in the numerical treatment of the long-range electrostatics in many-particle systems and the respective interaction energy and forces. In this paper, we outline the prospects for tensor-based numerical modeling of the collective electrostatic potential on lattices and in many-particle systems of general type. Our approach, initially introduced for the rank-structured grid-based calculation of the interaction potentials on 3D lattices is generalized here to the case of many-particle systems with variable charges placed on $L^{\otimes d}$ lattices and discretized on fine $n^{\otimes d}$ Cartesian grids for arbitrary dimension $d$. As a result, the interaction potential is represented in a parametric low-rank canonical format in $O(dLn)$ complexity. The total interaction energy can be then calculated in $O(dL)$ operations. Electrostatics in large bio-molecular systems is discretized on a fine $n^{\otimes 3}$ grid by using the novel range-separated $(\mathrm{RS})$ tensor format, which maintains the long-range part of the 3D collective potential of a many-body system in a parametric low-rank form in $O(n)$-complexity. We show how the energy and force field can be easily recovered by using the already precomputed electric field in the low-rank $\mathrm{RS}$ format. The $\mathrm{RS}$ tensor representation of the discretized Dirac delta enables the construction of the efficient energy preserving (conservative) regularization scheme for solving the 3D elliptic partial differential equations with strongly singular right-hand side arising in scientific computing. We conclude that the rank-structured tensor-based approximation techniques provide the promising numerical tools for applications to many-body dynamics in bio-sciences, protein docking and classification problems, for low-parametric interpolation of scattered data in data science, as well as in machine learning in many dimensions.
Key words: Coulomb potential, Slater potential, long-range many-particle interactions, low-rank tensor decomposition, range-separated tensor formats, summation of electrostatic potentials, energy and force calculations.
Received: 24.12.2020
Revised: 24.12.2020
Accepted: 14.01.2021
English version:
Computational Mathematics and Mathematical Physics, 2021, Volume 61, Issue 5, Pages 864–886
DOI: https://doi.org/10.1134/S0965542521050110
Bibliographic databases:
Document Type: Article
UDC: 519.63
Language: Russian
Citation: V. Kh. Khoromskaia, B. N. Khoromsky, “Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems”, Zh. Vychisl. Mat. Mat. Fiz., 61:5 (2021), 895; Comput. Math. Math. Phys., 61:5 (2021), 864–886
Citation in format AMSBIB
\Bibitem{KhoKho21}
\by V.~Kh.~Khoromskaia, B.~N.~Khoromsky
\paper Prospects of tensor-based numerical modeling of the collective electrostatics in many-particle systems
\jour Zh. Vychisl. Mat. Mat. Fiz.
\yr 2021
\vol 61
\issue 5
\pages 895
\mathnet{http://mi.mathnet.ru/zvmmf11246}
\crossref{https://doi.org/10.31857/S0044466921050112}
\elib{https://elibrary.ru/item.asp?id=45633499}
\transl
\jour Comput. Math. Math. Phys.
\yr 2021
\vol 61
\issue 5
\pages 864--886
\crossref{https://doi.org/10.1134/S0965542521050110}
\isi{https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=Publons&SrcAuth=Publons_CEL&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=000668966500016}
\scopus{https://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-85109069024}
Linking options:
  • https://www.mathnet.ru/eng/zvmmf11246
  • https://www.mathnet.ru/eng/zvmmf/v61/i5/p895
  • This publication is cited in the following 3 articles:
    Citing articles in Google Scholar: Russian citations, English citations
    Related articles in Google Scholar: Russian articles, English articles
    Журнал вычислительной математики и математической физики Computational Mathematics and Mathematical Physics
    Statistics & downloads:
    Abstract page:67
     
      Contact us:
     Terms of Use  Registration to the website  Logotypes © Steklov Mathematical Institute RAS, 2024