Abstract:
We define a DNA molecule as a sequence of the numbers 1 and 2 and embed it on a path of a Cayley tree such that each vertex of the Cayley tree belongs to only one DNA and each DNA has its own countable set of neighboring DNA. The Hamiltonian of this set of DNA is a model with two spin values regarded as DNA base pairs. We describe translation-invariant Gibbs measures (TIGMs) of the model on the Cayley tree of order two and use them to study the thermodynamic properties of the model of DNA. We show that there is a critical temperature Tc such that if the temperature T⩾Tc, then there is a unique TIGM, and if T<Tc, then there are three TIGMs. Each TIGM gives a phase of the set of DNA. In the cases of very high and very low temperatures, we find stationary distributions and typical configurations of the model.
Citation:
U. A. Rozikov, “Thermodynamics of interacting systems of DNA molecules”, TMF, 206:2 (2021), 199–209; Theoret. and Math. Phys., 206:2 (2021), 174–184
\Bibitem{Roz21}
\by U.~A.~Rozikov
\paper Thermodynamics of interacting systems of DNA molecules
\jour TMF
\yr 2021
\vol 206
\issue 2
\pages 199--209
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\jour Theoret. and Math. Phys.
\yr 2021
\vol 206
\issue 2
\pages 174--184
\crossref{https://doi.org/10.1134/S0040577921020057}
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Linking options:
https://www.mathnet.ru/eng/tmf9937
https://doi.org/10.4213/tmf9937
https://www.mathnet.ru/eng/tmf/v206/i2/p199
This publication is cited in the following 5 articles:
N. M. Khatamov, N. N. Malikov, “Holliday junctions in the set of DNA molecules for new translation-invariant Gibbs measures of the Potts model”, Theoret. and Math. Phys., 218:2 (2024), 346–356
U. A. Rozikov, “Kittel's molecular zipper model on Cayley trees”, Rev. Math. Phys., 36:01 (2024)
U. A. Rozikov, “Bubble coalescence in interacting system of DNA molecules”, Int. J. Biomath., 17:04 (2024)
Khatamov N.M., “Holliday Junctions in the Hc Blume-Capel Model in “One Case” on Dna”, Nanosyst.-Phys. Chem. Math., 12:5 (2021), 563–568
Rozikov U.A., “Gibbs Measures of Potts Model on Cayley Trees: a Survey and Applications”, Rev. Math. Phys., 33:10 (2021), 2130007