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Proceedings of the Institute for System Programming of the RAS, 2016, Volume 28, Issue 1, Pages 81–92
DOI: https://doi.org/10.15514/ISPRAS-2016-28(1)-5
(Mi tisp5)
 

Overlapping communications and computations in GPU-based iterative linear solvers

V. A. Platonov, A. V. Monakov

Institute for System Programming of the Russian Academy of Sciences RAS, 25 Alexander Solzhenitsyn Str., Moscow, 109004, Russian Federation
References:
Abstract: Krylov subspace methods such as Conjugate Gradient and Biconjugate Gradient Stabilized methods are well known approaches for solving symmetric and asymmetric systems of linear algebraic equations, such as systems usually arising from partial differential equations in computational mathematics problems, like Navier-Stokes equations in fluid dynamics. With increasing sizes of meshes and numbers of computational nodes, network communications time may become an issue: stalls during global reductions have increasing duration, preventing useful computations. This happens because, in original formulations of methods, computing a dot product requires a global reduce operation, and its value is required on the next step, so each process has to stop until all others reach this point, like in a barrier synchronization. We research alternative formulations of conjugate gradient methods (Preconditioned Conjugate Gradient and BiCGStab) for GPU-based iterative linear system solvers. They allow to have an overlap of parallel computations and communications, at the cost of increased amount of computations and memory requirements. We describe an implementation of our approach for GPU-accelerated hybrid systems in OpenFOAM, an open source framework for computational fluid dynamics. Asynchronous collective communications from MPI-3 parallel programming API are used to avoid full barrier synchronization and reduce latency. Experimental results on 2 and 4 million cases from standard OpenFOAM problems are presented.
Keywords: OpenFOAM, GPU, MPI, conjugate gradient method, bicgstab method, AINV preconditioning.
Funding agency Grant number
Russian Foundation for Basic Research 13-07-12102
The paper is supported by RFBR grant 13-07-12102
Bibliographic databases:
Document Type: Article
Language: Russian
Citation: V. A. Platonov, A. V. Monakov, “Overlapping communications and computations in GPU-based iterative linear solvers”, Proceedings of ISP RAS, 28:1 (2016), 81–92
Citation in format AMSBIB
\Bibitem{PlaMon16}
\by V.~A.~Platonov, A.~V.~Monakov
\paper Overlapping communications and computations in GPU-based iterative linear solvers
\jour Proceedings of ISP RAS
\yr 2016
\vol 28
\issue 1
\pages 81--92
\mathnet{http://mi.mathnet.ru/tisp5}
\crossref{https://doi.org/10.15514/ISPRAS-2016-28(1)-5}
\elib{https://elibrary.ru/item.asp?id=26166310}
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