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Program Systems: Theory and Applications, 2017, Volume 8, Issue 1, Pages 219–242
DOI: https://doi.org/10.25209/2079-3316-2017-8-1-219-242 (Mi ps258) 		 
This article is cited in 3 scientific papers (total in 3 papers)

Hardware and Software for Supercomputers

Program for analysis of genome distribution of chromosome contacts in cell nucleus by the data obtained using ChIA-PET and Hi-C technologies

E. V. Kulakovaa, A. M. Spitsinaa, A. G. Bogomolovb, N. G. Orlovaa, A. I. Dergileva, I. V. Chadaevab, V. N. Babenkob, Yu. L. Orlovb

a Novosibirsk State University
b Institute of Cytology and Genetics SB RAS
Full-text PDF (1730 kB) Citations (3)
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DOI: https://doi.org/10.25209/2079-3316-2017-8-1-219-242
Abstract: Due to the growth of genomics data there is an increasing need to develop new software for the processing and analysis of genomic data on chromosome contacts, transcription factor binding sites, and the genome features annotations based on modern sequencing technologies. We consider the technology of obtaining and analyzing genomic sequencing data based on ChIA-PET and Hi-C technologies. The computer program for statistical data processing and analysis methods for chromosome contacts data is presented. (In Russian).
Key words and phrases: bioinformatics, sequencing, supercomputing, chromosome contact, graphical interface, databases.
Funding agency Grant number
Russian Academy of Sciences - Federal Agency for Scientific Organizations 0324-2016-0008
Russian Foundation for Basic Research 14-04-01906_а
Russian Science Foundation 14-24-00123
Document Type: Article
UDC: 57.05; 577.0; 573.22; 004.031.2
Language: Russian
Citation: E. V. Kulakova, A. M. Spitsina, A. G. Bogomolov, N. G. Orlova, A. I. Dergilev, I. V. Chadaeva, V. N. Babenko, Yu. L. Orlov, “Program for analysis of genome distribution of chromosome contacts in cell nucleus by the data obtained using ChIA-PET and Hi-C technologies”, Program Systems: Theory and Applications, 8:1 (2017), 219–242
Citation in format AMSBIB
\Bibitem{KulSpiBog17}
\by E.~V.~Kulakova, A.~M.~Spitsina, A.~G.~Bogomolov, N.~G.~Orlova, A.~I.~Dergilev, I.~V.~Chadaeva, V.~N.~Babenko, Yu.~L.~Orlov
\paper Program for analysis of genome distribution of chromosome contacts in cell nucleus by the data obtained using ChIA-PET and Hi-C technologies
\jour Program Systems: Theory and Applications
\yr 2017
\vol 8
\issue 1
\pages 219--242
\mathnet{http://mi.mathnet.ru/ps258}
\crossref{https://doi.org/10.25209/2079-3316-2017-8-1-219-242}
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  • https://www.mathnet.ru/eng/ps/v8/i1/p219
    • This publication is cited in the following 3 articles:
    Citing articles in Google Scholar: Russian citations, English citations
    Related articles in Google Scholar: Russian articles, English articles
    		Program Systems: Theory and Applications
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    References:32
     
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