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Program Systems: Theory and Applications, 2015, Volume 6, Issue 1, Pages 157–174 (Mi ps162)  
This article is cited in 3 scientific papers (total in 3 papers)

Hardware, software and distributed supercomputer systems

Supercomputer analysis of genomics and transcriptomics data revealed by high-throughput DNA sequencing

A. M. Spitsinaa, Yu. L. Orlova, N. N. Podkolodnayaa, A. V. Svichkarevb, A. I. Dergilevb, M. Chenc, S. V. Kuchind, I. G. Chernykhd, B. M. Glinskijd

a Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences
b Novosibirsk State University
c Zhejiang University
d Institute of Computational Mathematics and Mathematical Geophysics SB RAS
Full-text PDF (1392 kB) Citations (3)
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Abstract: Development of high-throughput DNA sequencing technologies lead to new classes of bulk genomic data and consequent development of specialized algorithms and software. Supercomputing is necessary tool to deal with modern genetics data. We present technical problems related to gene expression analysis, genomics and transcriptomics data, as well as sequencing technologies related to gene expression. Approaches for automatic genome data annotation are discussed. (In Russian).
Key words and phrases: bioinformatics, DNA sequencing, microarrays, gene expression regulation, transcription, databases.
Received: 26.12.2014
Accepted: 24.02.2015
Document Type: Article
UDC: 004.031.2
Language: Russian
Citation: A. M. Spitsina, Yu. L. Orlov, N. N. Podkolodnaya, A. V. Svichkarev, A. I. Dergilev, M. Chen, S. V. Kuchin, I. G. Chernykh, B. M. Glinskij, “Supercomputer analysis of genomics and transcriptomics data revealed by high-throughput DNA sequencing”, Program Systems: Theory and Applications, 6:1 (2015), 157–174
Citation in format AMSBIB
\Bibitem{SpiOrlPod15}
\by A.~M.~Spitsina, Yu.~L.~Orlov, N.~N.~Podkolodnaya, A.~V.~Svichkarev, A.~I.~Dergilev, M.~Chen, S.~V.~Kuchin, I.~G.~Chernykh, B.~M.~Glinskij
\paper Supercomputer analysis of genomics and transcriptomics data revealed by high-throughput DNA sequencing
\jour Program Systems: Theory and Applications
\yr 2015
\vol 6
\issue 1
\pages 157--174
\mathnet{http://mi.mathnet.ru/ps162}
Linking options:
  • https://www.mathnet.ru/eng/ps162
  • https://www.mathnet.ru/eng/ps/v6/i1/p157
    • This publication is cited in the following 3 articles:
    Citing articles in Google Scholar: Russian citations, English citations
    Related articles in Google Scholar: Russian articles, English articles
    		Program Systems: Theory and Applications
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    Full-text PDF :158
    References:42
     
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