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Program Systems: Theory and Applications, 2014, Volume 5, Issue 4, Pages 257–267 (Mi ps139)  

This article is cited in 3 scientific papers (total in 3 papers)

Mathematical Foundations of Programming

Modeling of the optimal sequence alignment problem

Sergej Znamenskij

Program Systems Institute of RAS
References:
Abstract: The sequence alignment is widely used in various computer systems for data similarity measure and analysis, changes detection and relative tasks. Some intuitive requirements for string alignment are formalised in a test suite. The tests shows that none of existing approaches to string similarities and alignment meet the requirements. A new model of minimizing conflicts when merging changes is described. The model leads to a simple formulation of new optimization problem which meet the requirements. (In Russian).
Key words and phrases: similarity of strings, sequence alignment, edit distance, diff, LCS, Levenshtein metric, software development, continuous integration.
Received: 14.12.2014
Accepted: 31.12.2014
Document Type: Article
UDC: 004.416
Language: Russian
Citation: Sergej Znamenskij, “Modeling of the optimal sequence alignment problem”, Program Systems: Theory and Applications, 5:4 (2014), 257–267
Citation in format AMSBIB
\Bibitem{Zna14}
\by Sergej~Znamenskij
\paper Modeling of the optimal sequence alignment problem
\jour Program Systems: Theory and Applications
\yr 2014
\vol 5
\issue 4
\pages 257--267
\mathnet{http://mi.mathnet.ru/ps139}
Linking options:
  • https://www.mathnet.ru/eng/ps139
  • https://www.mathnet.ru/eng/ps/v5/i4/p257
  • This publication is cited in the following 3 articles:
    Citing articles in Google Scholar: Russian citations, English citations
    Related articles in Google Scholar: Russian articles, English articles
    Program Systems: Theory and Applications
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