Nanosystems: Physics, Chemistry, Mathematics
RUS  ENG    JOURNALS   PEOPLE   ORGANISATIONS   CONFERENCES   SEMINARS   VIDEO LIBRARY   PACKAGE AMSBIB  
General information
Latest issue
Archive

Search papers
Search references

RSS
Latest issue
Current issues
Archive issues
What is RSS



Nanosystems: Physics, Chemistry, Mathematics:
Year:
Volume:
Issue:
Page:
Find






Personal entry:
Login:
Password:
Save password
Enter
Forgotten password?
Register


Nanosystems: Physics, Chemistry, Mathematics, 2016, Volume 7, Issue 6, Pages 925–935
DOI: https://doi.org/10.17586/2220-8054-2016-7-6-925-935
(Mi nano299)
 

This article is cited in 22 scientific papers (total in 22 papers)

PHYSICS

Minimum energy path calculations with gaussian process regression

O.-P. Koistinena, E. Marasb, A. Vehtaria, H. Jónssonbc

a Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Finland
b Department of Applied Physics, Aalto University, Finland
c Faculty of Physical Sciences, University of Iceland, 107 Reykjavík, Iceland
Abstract: The calculation of minimum energy paths for transitions such as atomic and/or spin rearrangements is an important task in many contexts and can often be used to determine the mechanism and rate of transitions. An important challenge is to reduce the computational effort in such calculations, especially when ab initio or electron density functional calculations are used to evaluate the energy since they can require large computational effort. Gaussian process regression is used here to reduce significantly the number of energy evaluations needed to find minimum energy paths of atomic rearrangements. By using results of previous calculations to construct an approximate energy surface and then converge to the minimum energy path on that surface in each Gaussian process iteration, the number of energy evaluations is reduced significantly as compared with regular nudged elastic band calculations. For a test problem involving rearrangements of a heptamer island on a crystal surface, the number of energy evaluations is reduced to less than a fifth. The scaling of the computational effort with the number of degrees of freedom as well as various possible further improvements to this approach are discussed.
Keywords: minimum energy path, machine learning, Gaussian process, transition mechanism, saddle point.
Funding agency Grant number
Academy of Finland 263294
Icelandic Research Fund
This work was supported by the Academy of Finland (FiDiPro program grant no. 263294) and by the Icelandic Research Fund.
Received: 02.12.2016
Bibliographic databases:
Document Type: Article
Language: English
Citation: O.-P. Koistinen, E. Maras, A. Vehtari, H. Jónsson, “Minimum energy path calculations with gaussian process regression”, Nanosystems: Physics, Chemistry, Mathematics, 7:6 (2016), 925–935
Citation in format AMSBIB
\Bibitem{KoiMarVeh16}
\by O.-P.~Koistinen, E.~Maras, A.~Vehtari, H.~J\'onsson
\paper Minimum energy path calculations with gaussian process regression
\jour Nanosystems: Physics, Chemistry, Mathematics
\yr 2016
\vol 7
\issue 6
\pages 925--935
\mathnet{http://mi.mathnet.ru/nano299}
\crossref{https://doi.org/10.17586/2220-8054-2016-7-6-925-935}
\isi{https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=Publons&SrcAuth=Publons_CEL&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=000393046700004}
Linking options:
  • https://www.mathnet.ru/eng/nano299
  • https://www.mathnet.ru/eng/nano/v7/i6/p925
  • This publication is cited in the following 22 articles:
    Citing articles in Google Scholar: Russian citations, English citations
    Related articles in Google Scholar: Russian articles, English articles
    Nanosystems: Physics, Chemistry, Mathematics
    Statistics & downloads:
    Abstract page:78
    Full-text PDF :26
     
      Contact us:
     Terms of Use  Registration to the website  Logotypes © Steklov Mathematical Institute RAS, 2024