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Matematicheskaya Biologiya i Bioinformatika, 2011, Volume 6, Issue 2, Pages 211–227
(Mi mbb77)
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This article is cited in 4 scientific papers (total in 4 papers)
Bioinformatics
Software Package aSHAPE as a Tool to Study the Spatial Conformation of the Bacterial Genome Sites
V. V. Panyukova, N. N. Nazipovaa, O. N. Ozolineb a Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russian Federation
b Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russian Federation
Abstract:
The paper describes an interactive package aSHAPE capable to reveal common features and conformational peculiarities in the families of three-dimensional models of the DNA double helices. An applicability of aSHAPE to characterize promoter regions in the genome of Escherichia coli has been demonstrated.
Key words:
conformational chain, deformation, discriminant analysis, partitioning function, DNA double helix, promoter.
Received 01.08.2011, Published 19.08.2011
Citation:
V. V. Panyukov, N. N. Nazipova, O. N. Ozoline, “Software Package aSHAPE as a Tool to Study the Spatial Conformation of the Bacterial Genome Sites”, Mat. Biolog. Bioinform., 6:2 (2011), 211–227
Linking options:
https://www.mathnet.ru/eng/mbb77 https://www.mathnet.ru/eng/mbb/v6/i2/p211
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Abstract page: | 411 | Full-text PDF : | 65 | References: | 34 | First page: | 1 |
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