Abstract:
Method recognizing the flavivirus species, including a subtype recognition, that based on the genome sequence analysis, is proposed. This method takes into consideration frequency characteristics of amino acid codons in the coding sequences of full-length polyprotein of flavivirus genomes. High reliability of the method is proved in recognizing flavivirus genomes from 15 groups of different species and sub-types, that are sufficiently represented in the GenBank database. Ten various species of the flaviviruses, four sub-types of Dengue virus and Kunjin virus, that is suggested to be a sub-type of West Nile virus, are considered in the work.
Key words:
flavivirus genome, latent profile triplet periodicity, frequencies of amino acid codons, flavivirus species recognition.
Received 28.08.2019, 13.11.2019, Published 19.11.2019
Document Type:
Article
Language: Russian
Citation:
M. B. Chaley, Zh. S. Tyulko, V. A. Kutyrkin, “Flavivirus species recognition based on the polyprotein coding sequences”, Mat. Biolog. Bioinform., 14:2 (2019), 533–542
\Bibitem{ChaTyuKut19}
\by M.~B.~Chaley, Zh.~S.~Tyulko, V.~A.~Kutyrkin
\paper Flavivirus species recognition based on the polyprotein coding sequences
\jour Mat. Biolog. Bioinform.
\yr 2019
\vol 14
\issue 2
\pages 533--542
\mathnet{http://mi.mathnet.ru/mbb401}
\crossref{https://doi.org/10.17537/2019.14.533}
Linking options:
https://www.mathnet.ru/eng/mbb401
https://www.mathnet.ru/eng/mbb/v14/i2/p533
This publication is cited in the following 6 articles:
M.B. Chaley, V.A. Kutyrkin, “Typological Approaches to Recognizing Genus and Subgenus of Coronaviruses by Structural and Non-Structural Genes”, Math.Biol.Bioinf., 19:2 (2025), 593
M. B. Chalei, V. A. Kutyrkin, “Raspoznavanie roda koronavirusa na osnove prototipnykh shtammov”, Matem. biologiya i bioinform., 17:1 (2022), 10–27
M.B. Chaley, V.A. Kutyrkin, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, 9, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, 2022
Maria Chaley, Vladimir Kutyrkin, 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine (CSGB), 2022, 170
M. B. Chalei, Zh. S. Tyulko, V. A. Kutyrkin, “Issledovanie struktury kodirovaniya ORF1ab, S, M i N genov koronavirusov”, Matem. biologiya i bioinform., 15:2 (2020), 441–454
M.B. Chaley, Zh.S. Tyulko, V.A. Kutyrkin, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, 8, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, 2020
Citation in format AMSBIB
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