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This article is cited in 4 scientific papers (total in 4 papers)
Bioinformatics
The model of organization of coding in the genomes of prokaryotic organisms
V. A. Kutyrkina, M. B. Chaleyb a Moscow State Technical University n.a. N.E. Bauman, Moscow, Russia
b Institute of Mathematical Problems of Biology RAS, Pushchino, Russia
Abstract:
Coding DNA sequences (CDSs) analysis of a few prokaryotic organisms has been done on a basis of spectral-statistical approach (2S-approach). It is shown that the CDSs are characterized by a special type of latent periodicity, called earlier a profile periodicity. To explain the latent profile periodicity existence in DNA sequences a model of Stochastic Homogeneous Organization of Coding (SHOC-model) in the textual strings is considered. This model explains the existence of latent triplet periodicity and regularity in the CDSs. Specific manifestations of the SHOC-model are demonstrated in the numerical experiments with binary re-encoded literary text.
Key words:
spectral-statistical approach, latent periodicity, profile periodicity, CDS, SHOC-model.
Received 03.11.2015, 13.01.2016, Published 09.03.2016
Citation:
V. A. Kutyrkin, M. B. Chaley, “The model of organization of coding in the genomes of prokaryotic organisms”, Mat. Biolog. Bioinform., 11:1 (2016), 24–45
Linking options:
https://www.mathnet.ru/eng/mbb249 https://www.mathnet.ru/eng/mbb/v11/i1/p24
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Abstract page: | 237 | Full-text PDF : | 64 | References: | 47 |
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