Abstract:
Coding DNA sequences (CDSs) analysis of a few prokaryotic organisms has been done on a basis of spectral-statistical approach (2S-approach). It is shown that the CDSs are characterized by a special type of latent periodicity, called earlier a profile periodicity. To explain the latent profile periodicity existence in DNA sequences a model of Stochastic Homogeneous Organization of Coding (SHOC-model) in the textual strings is considered. This model explains the existence of latent triplet periodicity and regularity in the CDSs. Specific manifestations of the SHOC-model are demonstrated in the numerical experiments with binary re-encoded literary text.
Received 03.11.2015, 13.01.2016, Published 09.03.2016
Document Type:
Article
UDC:
577.2:519.23
Language: Russian
Citation:
V. A. Kutyrkin, M. B. Chaley, “The model of organization of coding in the genomes of prokaryotic organisms”, Mat. Biolog. Bioinform., 11:1 (2016), 24–45
\Bibitem{KutCha16}
\by V.~A.~Kutyrkin, M.~B.~Chaley
\paper The model of organization of coding in the genomes of prokaryotic organisms
\jour Mat. Biolog. Bioinform.
\yr 2016
\vol 11
\issue 1
\pages 24--45
\mathnet{http://mi.mathnet.ru/mbb249}
\crossref{https://doi.org/10.17537/2016.11.24}
Linking options:
https://www.mathnet.ru/eng/mbb249
https://www.mathnet.ru/eng/mbb/v11/i1/p24
This publication is cited in the following 4 articles:
Chaley M., Kutyrkin V., “Stochastic Models For Description of Structural-Statistical Properties in Dna Sequences”, J. Theor. Biol., 496 (2020), 110126
M. B. Chalei, Zh. S. Tyulko, V. A. Kutyrkin, “Issledovanie struktury kodirovaniya ORF1ab, S, M i N genov koronavirusov”, Matem. biologiya i bioinform., 15:2 (2020), 441–454
M.B. Chaley, Zh.S. Tyulko, V.A. Kutyrkin, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, 7, Proceedings of the International Conference “Mathematical Biology and Bioinformatics”, 2018
Zh. S. Tyulko, V. A. Kutyrkin, M. B. Chalei, “Strukturno-statisticheskie svoistva genomov flavivirusov”, Matem. biologiya i bioinform., 12:2 (2017), 343–353
Citation in format AMSBIB
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