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Matematicheskaya Biologiya i Bioinformatika, 2015, Volume 10, Issue 2, Pages 580–592
DOI: https://doi.org/10.17537/2015.10.580
(Mi mbb246)
 

Mathematical Modeling

Inclusion of the most important multi-particle interactions in the AMBER force field and optimization of energy parameters of the revised force field

S. A. Garbuzinskiya, B. T. Matkarimovb, A. V. Finkelsteina

a Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, 142290 Russia
b National Laboratory Astana, Nazarbayev University, Astana, Kazakhstan
References:
Abstract: A new functional form for force field of non-covalent interactions is developed. Besides traditional members, it involves induced (by partial charges) polarization of all atoms as well as three-particle dispersion interactions of atoms with covalent bonds. The corresponding new members are added to a standard AMBER force field. Within this unified functional form of the force field, parameters of all types of non-covalent interactions are optimized using data on molecular crystals. A noticeable increase in correlation coefficient between calculated and experimental energy of cohesion of molecules in molecular crystals is shown.
Key words: non-covalent atom-atom interactions, three-particle interactions, polarizability, partial charges, “atom-covalent bond” interaction, molecular crystals, energy of cohesion.
Received 08.12.2015, Published 24.12.2015
Document Type: Article
UDC: 577.1, 577.3, 54.03
Language: Russian
Citation: S. A. Garbuzinskiy, B. T. Matkarimov, A. V. Finkelstein, “Inclusion of the most important multi-particle interactions in the AMBER force field and optimization of energy parameters of the revised force field”, Mat. Biolog. Bioinform., 10:2 (2015), 580–592
Citation in format AMSBIB
\Bibitem{GarMatFin15}
\by S.~A.~Garbuzinskiy, B.~T.~Matkarimov, A.~V.~Finkelstein
\paper Inclusion of the most important multi-particle interactions in the AMBER force field and optimization of energy parameters of the revised force field
\jour Mat. Biolog. Bioinform.
\yr 2015
\vol 10
\issue 2
\pages 580--592
\mathnet{http://mi.mathnet.ru/mbb246}
\crossref{https://doi.org/10.17537/2015.10.580}
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