Abstract:
Complex geometric organization of subcellular structures such as photosynthetic or mitochondrial membranes determines mechanism of electron and proton transfer processes. We propose new approach in modeling processes, where geometric shape of membranes is accurately taken into account. Different stages of charge transfer process are simulated using different approaches, which are integrated into a combined model. We implemented this model as software which utilizes parallel computations on high-performance clusters and GPUs for better performance.
Citation:
D. M. Ustinin, I. B. Kovalenko, G. Yu. Riznichenko, A. B. Rubin, “Combination of different simulation techniques in the complex model of photosynthetic membrane”, Computer Research and Modeling, 5:1 (2013), 65–81
\Bibitem{UstKovRiz13}
\by D.~M.~Ustinin, I.~B.~Kovalenko, G.~Yu.~Riznichenko, A.~B.~Rubin
\paper Combination of different simulation techniques in the complex model of photosynthetic membrane
\jour Computer Research and Modeling
\yr 2013
\vol 5
\issue 1
\pages 65--81
\mathnet{http://mi.mathnet.ru/crm382}
\crossref{https://doi.org/10.20537/2076-7633-2013-5-1-65-81}
Linking options:
https://www.mathnet.ru/eng/crm382
https://www.mathnet.ru/eng/crm/v5/i1/p65
This publication is cited in the following 9 articles:
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Galina Yu. Riznichenko, Natalya E. Belyaeva, Ilya B. Kovalenko, Taras K. Antal, Sergei N. Goryachev, Aleksei S. Maslakov, Tatiana Yu. Plyusnina, Vladimir A. Fedorov, Sergei S. Khruschev, Olga V. Yakovleva, Andrew B. Rubin, “Mathematical Simulation of Electron Transport in the Primary Photosynthetic Processes”, Biochemistry Moscow, 87:10 (2022), 1065
A. S. Lelekov, R. P. Trenkenshu, “Dvukhkomponentnaya model rosta mikrovodoroslei v plotnostate”, Matem. biologiya i bioinform., 16:1 (2021), 101–114
Galina Riznichenko, Andrew Rubin, Advances in Photosynthesis and Respiration, 47, Photosynthesis: Molecular Approaches to Solar Energy Conversion, 2021, 465
A. A. Yakovlev, A. I. Abakumov, A. V. Kostyushko, E. V. Markelova, “Tsitokiny kak indikatory sostoyaniya organizma pri infektsionnykh zabolevaniyakh. Analiz eksperimentalnykh dannykh”, Kompyuternye issledovaniya i modelirovanie, 12:6 (2020), 1409–1426
Galina Yurjevna Riznichenko, Ilya Kovalenko, “Multiparticle Models of Brownian Dynamics for the Description of Photosynthetic Electron Transfer Involving Protein Mobile Carriers”, International Journal of Applied Research in Bioinformatics, 9:1 (2019), 1
Alexander S. Lelekov, Rudolf P. Trenkenshu, “Modeling of photosynthesis light curves by linear splines”, Hydrosphere Ecology (Ekologiya gidrosfery), 2019, no. 2(4), 20
Andrew Rubin, Galina Riznichenko, Biological and Medical Physics, Biomedical Engineering, Mathematical Biophysics, 2014, 241
E. S. Oplachko, D. M. Ustinin, M. N. Ustinin, “Oblachnye tekhnologii i ikh primenenie v zadachakh vychislitelnoi biologii”, Matem. biologiya i bioinform., 8:2 (2013), 449–466
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